Academic Details:
- Post Doctoral Fellow: Institute postdoctoral fellow in the Department of Chemistry, IISER Berhampur, Berhampur, Odisha, India since 13 th April 2018.
- PhD: Department of Biotechnology, Burdwan University,
- M.Sc (Biotechnology): Burdwan University, Burdwan, 2011
- B.Sc (Biotechnology): Burdwan University, Burdwan, 2009
- Higher Secondary: Central Board of Secondary Education, 2004
- Senior Secondary: Central Board of Secondary Education, 2002
Research Papers:
COVID-19 Publications
- Binding mechanism and structural insights into the identified protein target of COVID- 19 and importin-α with in-vitro effective drug ivermectin (2020)
- Ivermectin, Famotidine, and Doxycycline: A Suggested Combinatorial Therapeutic for the Treatment of COVID-19 (2020)
- Binding insight of clinically oriented drug famotidine with the identified potential target of SARS-CoV-2 (2020)
NEWS
- Bhubaneswar: Drugs combo can help fight virus, claims IISER Study (Times of India) (2020)
- IISER Berhampur Research Team Suggests Drug Combo To Fight Covid-19 (2020)
General Publications
- Computer-aided discovery of bis-indole derivatives as multi-target drugs against cancer and bacterial infections: DFT, docking, virtual screening, and molecular dynamics studies (2020)
- Alkylated benzimidazoles: Design, synthesis, docking, DFT analysis, ADMET property, molecular dynamics and activity against HIV and YFV (2020)
- Designing of a novel multi-epitope peptide based vaccine against Brugia malayi: An in silico approach (2020)
- Screening and molecular characterization of lethal mutations of human homogentisate 1, 2 dioxigenase (2020)
- Anti-HIV potential of diarylpyrimidine derivatives as non-nucleoside reverse transcriptase inhibitors: design, synthesis, docking, TOPKAT analysis and molecular dynamics simulations
- Parth Sarthi Sen Gupta, Shyamashree Banerjee, Sudipta Mondal, Rifat Nawaz Ul Islam, Buddhadev Mondal, Amal Kumar Bandyopadhyay. PHYSICO: An UNIX based Standalone Procedure for Computation of Individual and Group Properties of Protein Sequences. Bioinformation. 2014, 10 (2), 105.
- Parth Sarthi Sen Gupta, Sudipta Mondal, Buddhadev Mondal, Rifat Nawaz Ul Islam, Shyamashree Banerjee & Amal K Bandyopadhyay. SBION: A Program for Analyses of Salt-Bridges from Multiple Structure Files. Bioinformation. 2014,10 (3), 164
- Parth Sarthi Sen Gupta, Arnab Nayek, Shyamashree Banerjee, Pratyay Seth, Sunit Das, Vishma Pratap Sur, Chittran Roy & Amal Kumar Bandyopadhyay. SBION2: Analyses of Salt-Bridges from Multiple Structure Files, Version 2. Bioinformation. 2015,11 (1), 039-042
- Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee, Buddhadev Mondal, Amal K. Bandyopadhyay Salt-Bridge Energetics in Halophilic Proteins. Plos One. 2014,9(4), e93862
- Sen Gupta Parth Sarthi, Banerjee Shyamashree and Bandyopadhyay Amal Kumar, Sequence, Structural and Functional Characterization of Homogentisate-1, 2-dioxygenase of homo sapiens: An in silico Analysis. American Journal of Bioinformatics Research. (2013), 3, 42-61.
- Sen Gupta Parth Sarthi, Mondal Buddhadev and Bandyopadhyay Amal Kumar. In silico characterization of human tyrosinase using computational tools and servers. IJPBS. (2013), 4(3), 181.
- Sen Gupta Parth Sarthi, Mondal Buddhadev and Bandyopadhyay Amal Kumar. In silico characterization of human cyclooxygenase using computational tools and servers. IJIPLS. (2013), 3(6), 124.
- Sen Gupta Parth Sarthi, Banerjee Shyamashree, Mondal Sudipta, Mondal Buddhadev, Bandyopadhyay Amal Kumar. An insight into structure and function of chalchone synthase from the sequence of Solanum Tuberosum. Journal of Advanced Bioinformatics application research. (2014), 5(1), 8.
- Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee, Sunit Das, Vishma Pratap Sur, Pratay Seth, Rifat Nawaz Ul Islam and Amal K bandyopadhyay. ADSBET--Automated Determination of Salt-bridge Energy Terms. IJIPLS. (2015), 5(3), 28-36.
- Shyamashree Banerjee*, Parth Sarthi Sen Gupta*, Arnab Nayek*, Sunit Das, Vishma Pratap Sur, Pratyay Seth, Rifat Nawaz Ul Islam, & Amal K Bandyopadhyay. PHYSICO2: An UNIX based Standalone Procedure for Computation of Physicochemical, Window-dependent and Substitution Based Evolutionary Properties of Protein Sequences along with Automated Block Preparation Tools, Version 2. Bioinformation. (2015), 11(7), 366-368.
- Arnab Nayek*, Parth Sarthi Sen Gupta*, Shyamashree Banerjee*, Sunit Das, Vishma Pratap Sur, Pratay Seth, Rifat Nawaz Ul Islam and Amal K bandyopadhyay. ADSBET2-- Automated Determination of Salt-bridge Energy Terms version 2. Bioinformation. (2015), 11(8), 413-415.
- Arnab Nayek*, Parth Sarthi Sen Gupta*, Shyamashree Banerjee*, Biswa Pratap Sur, Pratay Seth, Sunit Das, Nathan A Baker, Amal K Bandyopadhyay. ADSETMEAS: Automated Determination of Salt-bridge Energy Terms and Micro Environment from Atomic Structures using APBS method, version 1.0. PROTEIN SCIENCE, (2015), 24, 216-217.
- Buddhadev Mondal, Parth Sarthi Sen Gupta, Chittran Roy, Niladri Hazra, Amal Kumar Bandyopadhyay. Comparative Studies on Sequence, Structure and SNPS of E1 Envelope Glycoprotein of Chikungunya Circulating in Maharashtra and West Bengal States of India. IJPBS, (2016), 7(2), 406-417.
- Parth Sarthi Sen Gupta, Shyamashree Banerjee, Rifat Nawaz Ul Islam, Vishma Pratap Sur, and Amal K. Bandyopadhyay. "Substitutional Analysis of Orthologous Protein Families Using BLOCKS." Bioinformation 13, no. 1 (2017): 1-7.
- Banerjee Shyamashree, Parth Sarthi Sen Gupta, and Amal Kumar Bandyopadhyay. "Insight into SNPs and epitopes of E protein of newly emerged genotype-I isolates of JEV from Midnapur, West Bengal, India." BMC immunology 18, no. 1 (2017): 13.
- Inul Ansary, Arijit Das, Parth Sarthi Sen Gupta, Amal Kumar Bandyopadhyay. Synthesis, Molecular Modeling of N-acyl Benzoazetinones and their Docking Simulation on Fungal Modeled Target. Synthetic Communication. 2017. 47 (15), 1375-1386.